Following is the final VDOSME workshop agenda:

Programme

Saturday, 21 July 2012

8:30 – 9:00 am Registration
 
9:00 – 9:10 am Welcome Introduction

• Self-introductions of all attendees
• Yongqun "Oliver" He: briefly introduce the whole day schedule with any possible updates 

9:10 - 9:50 am
Session 1: Ontology modeling and analysis
Chair:  Gully Burns

• Yu Lin and Yongqun He.
  Ontology representation and analysis of vaccine formulation and administration and their effects on vaccine immune responses (25 min) [Slides]   

• Drashti Dave and Gully Burns.
  A lightweight Ontology Design Pattern to curate and represent experimental variables from vaccine protection studies (15 min) [Slides]

9:50 - 10:40 am
Session 2: Ontology-based knowledge extraction from big data case reports or literature
Chair:  Luca Toldo 

• Harsha Gurulingappa, Abdul-Mateen Rajput, Luca Toldo.
  Extraction of Adverse Drug Effects from Medical Case Reports (25 min) [Slides]

• Junguk Hur, Arzucan Özgür, Zuoshuang Xiang and Yongqun He.
  Identification of fever and vaccine-associated gene interaction networks using ontology-based literature mining (25 min) [Slides]
  

10:40 – 11:10 am  Break

11:10 am – 12:00 noon
Session 3: Ontology-based semantic web applications
Chair: Oliver He

• Qian Zhu, Guoqian Jiang and Christopher Chute.
  Profiling structured product labeling using NDF-RT and RxNorm (25 min) [Slides]

• Charalampos Doulaverakis, George Nikolaidis, Athanasios Kleontas and Yiannis Kompatsiaris.
  GalenOWL: Ontology based drug recommendations discovery (25 min) [Slides]
   

12:00 noon - 1:30 pm Lunch break

1:30 – 2:05 pm
Session 4: General Discussion #1
Moderator: Luca Toldo
Topic: Relation between drug and vaccine ontology informatics (35 min)

• Similarities and differences between drug and vaccine informatics
• Collaborations between drug and vaccine ontology informatics fields
• Collaborations between academia and industry

2:05 – 2:30 pm
Session 5: Teleconference Presentation by a presenter from USA
Chair:  Oliver He

• Cui Tao, Yongqun He, Gregory Poland and Christopher Chute.
  Time modeling of vaccine adverse events in VAERS for temporal analysis (25 min) [Slides]
   
  

2:30 – 3:30 pm
Session 6: General Discussion #2
Moderators: Melanie Courtot and Oliver He
Topic: Updates on development of adverse event-related ontologies (60 min)  

• Melanie: Updates on the development of the Adverse Event Reporting Ontology (AERO) and related ontologies (short talk: 15 min) [Slides]
• Oliver: Updates on the development of the Ontology of Adverse Events (OAE) and its applications (short talk: 15 min) [Slides]
• Further discussion

3:30 - 4:00 pm Break
 
4:00 – 4:45 pm
Session 7: General Discussion #3
Moderator: Gully Burns
Topic: Challenges and opportunities (45 min)    

• Current achievements and challenges
• International community collaborations
• Have another workshop next year?
• Other open issues for discussion
• See Gully's slides and discussion notes: note 1, note 2, and note 3.
  

4:45 pm Workshop ends

 

Notes:

• The authors with bold highlight are the paper presenters.
• This schedule can also be found as part of the Complete ICBO-FOIS Brochure. Our VDOSME workshop program is described on Pages 26 and 27 of this brochure.
• You can check out our PDF version of the VDOSME workshop program.

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FLASH Talk in the General ICBO Meeting

Oliver He presented a 3-minute VDOSME 2012 Flash Talk in the morning of the first day (Monday, 23 July 2012) of the general ICBO 2012 meeting at Graz, Austria.